Code Documentation

API Reference:

• The adaptive_sampling package
  • Subpackages
  • Submodules
  • adaptive_sampling.units
  • Module contents
• Sampling Algorithms
  • adaptive_sampling.sampling_tools.abf module
  • adaptive_sampling.sampling_tools.amd module
  • adaptive_sampling.sampling_tools.awtmeabf module
  • adaptive_sampling.sampling_tools.eabf module
  • adaptive_sampling.sampling_tools.enhanced_sampling module
  • adaptive_sampling.sampling_tools.feneb module
  • adaptive_sampling.sampling_tools.harmonic_constraint module
  • adaptive_sampling.sampling_tools.metadynamics module
  • adaptive_sampling.sampling_tools.metaeabf module
  • adaptive_sampling.sampling_tools.opes module
  • adaptive_sampling.sampling_tools.opeseabf module
  • adaptive_sampling.sampling_tools.reference module
  • adaptive_sampling.sampling_tools.utils module
  • Module contents
• Processing Tools
  • adaptive_sampling.processing_tools.gamd module
  • adaptive_sampling.processing_tools.mbar module
  • adaptive_sampling.processing_tools.metadynamics module
  • adaptive_sampling.processing_tools.opes_postproc module
  • adaptive_sampling.processing_tools.thermodynamic_integration module
  • adaptive_sampling.processing_tools.utils module
  • Module contents
• Molecular Dynamics Interfaces
  • adaptive_sampling.interface.interfaceASE module
  • adaptive_sampling.interface.interfaceASH module
  • adaptive_sampling.interface.interfaceMD_2D module
  • adaptive_sampling.interface.interface_openmm module
  • adaptive_sampling.interface.sampling_data module
  • Module contents
• Collective Variables
  • adaptive_sampling.colvars.colvars module
  • adaptive_sampling.colvars.graph_cv module
  • adaptive_sampling.colvars.mlcolvar module
  • adaptive_sampling.colvars.path_cv module
  • adaptive_sampling.colvars.plumed_cv module
  • adaptive_sampling.colvars.proton_transfer module
  • adaptive_sampling.colvars.utils module
  • Module contents